Journal Club

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This is the schedule for the regular group meeting at the Spang Lab.

End of Christmas Break

9:30

Seminar Algorithmische Bioinformatik (Master)

DriverGroup: a novel method for identifying driver gene groups

Clementine Döring

9:30

Seminar Algorithmische Bioinformatik (Master)

MaxCLK: discovery of cancer driver genes via maximal clique and information entropy of modules

Maximilian Sombke

9:30

Seminar Algorithmische Bioinformatik (Master)

Unravelling cancer subtype-specific driver genes in single-cell transcriptomics data with CSDGI

Jonas Ducheck

9:30

Seminar Algorithmische Bioinformatik (Master)

Machine learning and multi-omics data reveal driver gene-based molecular subtypes in hepatocellular carcinoma for precision treatment

Mohammed-Golam-Montaseer Alam

9:30

Bachelor Thesis presentation

Implementing and training a self-supervised vision transformer (DINOv3) on whole-slide biopsies images using Julia optimized via MLIR and XLA

Ben Weber

9:30

Master Thesis presentation

Unsupervised Genome-Based Classification of Enterococcus faecium

Jasmine Alikhani

9:30

IT-Infrastructure@SpangLab

Christian Kohler

No group meeting due to Data March

9:30

Segmentation for spatial analysis of cells in highly multiplexed immunofluorescent images

Benjamin Bancher

Start of Spring Break

End of Spring Break

9:30

Master Thesis presentation

Validation of tissue deconvolution for single-cell analysis of lipidomic bulk data

Alexander Pieper

9:30

Cell-type-specific analyses of bulk data

Fabio Teves

9:30

Systematically evaluating genomic biomarker risks for outcome associations

Andreas Lösch

9:30

Compositional Regularization

Unexpected Obstacles in Enhancing Neural Network Generalization

Lukas Wolfseher

9:30

Compositional Regularization

The Two-Phase Periodic Stokes Flow in Two Dimensions: Well-Posedness and Stability

Daniel Böhme

9:30

Master Thesis presentation

Development and Evaluation of a Robust cgMLST Scheme for Staphylococcus epidermidis

Parham Heydarzadeh-Ghamsary

Start of Pentecost Break

End of Pentecost Break

9:30

Safty briefing (Sicherheitseinweisung)

Rainer Spang

9:30

Seminar Statistische Bioinformatik (Master)

SynToxProfiler: An interactive analysis of drug combination synergy, toxicity and efficacy

Johannes Attenkofer

9:30

Seminar Statistische Bioinformatik (Master)

DeepTraSynergy: drug combinations using multimodal deep learning with transformers

Mohammed-Golam-Montaseer Alam

9:30

Seminar Statistische Bioinformatik (Master)

PathSynergy: a deep learning model for predicting drug synergy in liver cancer

Giovanni Ancarani

9:30

Seminar Statistische Bioinformatik (Master)

Characterizing clinical toxicity in cancer combination therapies

Jonas Ducheck

9:30

Claudio Lottaz

9:30

TBA

9:30

TBA

Start of Summer Break

End of Summer Break