Journal Club
This is the schedule for the regular group meeting at the Spang Lab.
End of Christmas Break
9:30
Seminar Algorithmische Bioinformatik (Master)
Efficient Approaches to Sequence Alignment: An Overview with a Focus on FMAlign2Jan-Niklas Möldner
9:30
Seminar Algorithmische Bioinformatik (Master)
NanoSplicer: accurate identification of splice junctions using Oxford Nanopore sequencingJasmine Alikhani
9:30
Seminar Algorithmische Bioinformatik (Master)
NanoMethViz: An R/Bioconductor package for visualizing long-read methylation dataParham Heydarzadeh-Ghamsary
9:30
Seminar Algorithmische Bioinformatik (Master)
DeepMP: a deep learning tool to detect DNA base modifications on Nanopore sequencing dataAlison Durst
9:30
urnc v2 - digital teaching tool
Michael Huttner
Genomic Data Analysis - no group meeting
9:30
Posterior Sampling for Mutual Hazard Networks Using Differential Geometric Markov Chain Monte Carlo
Linda Hu
9:30
Self-supervised Learning with MoCo (Momentum Contrast)
Lukas Wolfseher
Data March - no group meeting
9:30
Professional Specialisation (w.r.t. Master Thesis)
Tumor Detection and Subtyping on Lymphoma Histopathology SlidesJuan-Fernando Osorio-Vargas
9:30
Professional Specialisation (w.r.t. Master Thesis)
Analysing Image Resolution for Accurate Classification of Digital Pathology Images Using Deep LearningShini Cherattu-Valappil
Cancelled
9:30
Transformer Multiple Instance Learning in Lymphoma Subtyping
Paul Hüttl
9:30
Master thesis progress report
Developing a Web Application for the Dynamic Exploration of Tumor HistoriesAntonia Kaspar
Start of Easter Break
End of Easter Break
9:30
Bachelor Thesis Report
Porting Metabodecon to RustMaximilian Sombke
Cancelled
9:30
Transcriptional characterization of colorectal cancer liver metastasis growth patterns
Andreas Lösch
9:30
urnc - Uni Regensburg Noebook Converter
Tobias Schmidt
9:30
The Application of Long-Read Sequencing to Cancer
Claudio Lottaz
9:30
dabih v2 and the Origin Private File System
Michael Huttner
Start of Pentecost Break
End of Pentecost Break
9:30
Seminar Statistische Bioinformatik (Master)
ReGeNNe: Genetic pathway-based deep neural network using canonical correlation regularizer for disease predictionParham Heydarzadeh-Ghamsary
10:15
Seminar Statistische Bioinformatik (Master)
PathSynergy: a deep learning model for predicting drug synergy in liver cancerJan-Niklas Möldner
9:30
Seminar Statistische Bioinformatik (Master)
Biologically informed deep neural network for prostate cancer discoveryMaximilian Sombke
10:15
Seminar Statistische Bioinformatik (Master)
Robust biomarker identification for cancer diagnosis with ensemble feature selection methodsJakob Drumm
9:30
Seminar Statistische Bioinformatik (Master)
c-Triadem: A constrained, explainable deep learning model to identify novel biomarkers in Alzheimer's diseaseJasmine Alikhani
10:15
Seminar Statistische Bioinformatik (Master)
Deep learning for cancer type classification and driver gene identificationClementine Döhring
9:30
Master thesis presentation
Tumor detection and subtyping on lymphoma histopathology slidesJuan-Fernando Osorio-Vargas
9:30
Master thesis presentation
Image Quality Assessment in Digital Pathology Classification TasksShini Cherattu-Valappil
9:30
Master thesis presentation
Developing a Web Application for the Dynamic Exploration of Tumor HistoriesAntonia Kaspar
10:00
Bachelor thesis presentation
Modeling metastatic breast cancer progressionErik Fischer
10:30
Bachelor thesis presentation
Comparing mutational timings of copy numbr gains across cancer patientsNina Fröhlich
Start of Summer Break
End of Summer Break
9:30
An overview of foundation models for single-cell transcriptomics
Andreas Lösch
9:30
Professional Specialisation (w.r.t. Master Thesis)
Comparative Genome Development of a cgMLST Scheme for Staphylococcus epidermidisParham Heydarzadeh-Ghamsary
10:15
Professional Specialisation (w.r.t. Master Thesis)
Unsupervised Genome-Based Classification of Enterococcus faeciumJasmine Alikhani
9:30
Posterior Sampling for MHN Using (Simplified Manifold) MALA
Linda Hu
9:30
IT-Infrastructure@SpangLab
MFA@UR - A non-technical but practical introductionChristian Kohler
Data lecture start - no group meetings
Data lecture end - no group meetings
9:30
H&E and CD20 for Lymphoma Classification
Lukas Wolfseher
Group meeting cancelled
9:30
Why everyone is switching to Rust and why you might be using it already
Michael Huttner
9:30
Ten simple rules for optimal and careful use of generative AI in science
Claudio Lottaz
9:30
Progress report in Practical Bioinformatics
Linking Codon Usage Patterns to Protein N-Glycosylation and Establishing a Predictive FrameworkMarcel Rüllke
10:00
Progress report in Practical Bioinformatics
Biologically weighted LASSOLukas Bürger
9:30
Progress report in Master Internship
Implementation of metacells for tissue deconvolutionMaximilian Sombke
Start Christmas Break