Journal Club
This is the schedule for the regular group meeting at the Spang Lab.
End of Christmas Holidays
9:30
Seminar Algorithmische Bioinformatik (Master)
Adversarial deconfounding autoencoder for learning robust gene expression embeddingsMena Nasr
10:15
Seminar Algorithmische Bioinformatik (Master)
Deep Subspace Mutual Learning For Cancer Subtypes PredictionMatthias Meier
9:30
Seminar Algorithmische Bioinformatik (Master)
GraphDTA: Predicting drug-target binding affinity with graph neural networksJonathan Stahlberger
10:15
Seminar Algorithmische Bioinformatik (Master)
Global importance analysis: An interpretability method to quantify importance of genomic features in deep neural networksStefan Vocht
9:30
Metabodefense: Statistical Models of Macrophage’s etabolic and Transcriptomic Immune Response to Salmonella Infection
Lena Buck
9:30
Pathway Activation in scRNA-seq datasets
Marian Schön
9:30
Drug Response Prediction Pipeline
Durdam Das
Microarray Course
9:30
Diagnosis in human genetics - professional software and data resources
Sibylle Wilfling
9:30
Public Relations for the Statistical Bioinformatics Group
Rainer Spang
9:30
Master thesis presentation
Kubernetes Job RunnerShivam Goyal
9:30
Master thesis presentation
Donor and Recipient specific Reads in RNAseq data of transplanted liverMaria Attenberger
9:30
Master thesis presentation
Feature Influence analysis on molecular signatures from LASSO or zeroSum RegressionMarcel Mück
9:30
Functional role of histone tails in organising chromatin structure
Simon Holzinger
9:30
XAI for the molecular subclassification of DLBCL
Tobias Schmidt
Start of Easter Break
End of Easter Break
9:30
Accurate expression quantification from nanopore direct RNA sequencing with NanoCount
Claudio Lottaz
9:30
IT-Infrastructure@SpangLab
Christian Kohler
9:30
Combining data from different technologies in Digital Tissue Deconvolution
Zahra Nozari
9:30
Spang Lab: Encrypted data storage
Merging Metadata Collector and DatatombMichael Huttner
9:30
Best practices for writing research code
Daniel Grünbaum
9:30
Using Mixed Graphical Models for anomaly detection and correction
Lena Buck
Start of Pentecost Break
End of Pentecost Break
9:30
Teaching wish list before bioinformatics internships
Needs in software engineering, statistics and moreRainer Spang
9:30
Seminar Statistische Bioinformatik (Master)
Classification of high dimensional data using LASSO ensemblesEnrico Orsino Mayer
9:30
Seminar Statistische Bioinformatik (Master)
XGBoost A Scalable Tree Boosting SystemPayman Tajalli Seifi
10:15
Seminar Statistische Bioinformatik (Master)
Optimal prediction of the number of unseen speciesTahmina Mojumder
9:30
Jack Kuipers
9:30
Teaching wish list before bioinformatics internships
Needs in software engineering, statistics and moreRainer Spang
9:30
Master thesis presentation
Effect of Cell Type Calling on the Predictability of DTD EstimatesMichelle Batsch
9:30
PathwayGNN: Application of Graph Neural Network for Drug Response Prediction
Durdam Das
Start of Summer Break
End of Summer Break
9:30
Teaching wish list before bioinformatics internships
Needs in software engineering, statistics and moreRainer Spang
9:30
Internal project discussion
Claudio Lottaz
Genomic Data Analysis Course
9:30
Internal project discussion
Claudio Lottaz
9:30
Eigensample: A non iterative technique for adding samples to small datasets
Tobias Schmidt
9:30
Parallelization Using CUDA
Linda Hu
9:30
A (final) overview of deconvolution at the spang-lab
Marian Schön
All Saints' Day
9:30
RNA folding using quantum computers
Claudio Lottaz
9:30
IT-Infrastructure@SpangLab
Christian Kohler
9:30
Single cell RNA sequencing data
Zahra Nozari
9:30
Quantitative probing: Validating causal models with quantitative domain knowledge
Daniel Grünbaum
9:30
Dabih: Encrypted data storage
Michael Huttner
8:15
PhD thesis defence
Mutational Hazard Networks: Markov chain models of cancer progressionRudolf Schill
9:30
LiveCellTrack: A semi-automated pipeline for high-throughput bright field microscopy images
Durdam Das
Start of Christmas Break