Journal Club Archive 2020

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This is the schedule for the regular group meeting at the Spang Lab.


9:30
Seminar Algorithmische Bioinformatik
Race in a genome: long read sequencing, ethnicity-specific reference genomes and the shifting horizon of race
Andreas Lösch

10:15
Seminar Algorithmische Bioinformatik
High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide resolution
Robert Bosek

9:30
cancelled
Rainer Spang

9:30
Cell Cloud Classification
Gunther Glehr

9:30
Modelling Metastasis using Mutual Hazard Networks
Kevin Rupp

Microarray Analysis Course
cancelled

9:30
Cell Viability Prediction
convolutional neural network to predict luminescence markers of breast cancer cells
Christoph Kopp

9:30
Master thesis talk
Nucleosome dynamics during the erythrocytic life cycle of Plasmodium falciparum
Victoria-Marie Rothe

cancelled

10:30
Modern frontend web applications using react.js
Michael Huttner

9:30
Public Relations for the Statistical Bioinformatics Group
Rainer Spang

9:30
Automated Server Management using ANSIBLE
Christian Kohler

9:30
Stochastic Recurrent Neural Nets in Tensor Language
Rudolf Schill

9:30
A cake, a github R-package, and many open projects
Marian Schön

Easter break
cancelled

9:30
CCC: Cell/Point Cloud Classification
Gunther Glehr

9:30
Assignments for projects in Praktische Bioinformatik
Claudio Lottaz

9:30
Extension of the MHN model - The MHN with hidden events
Lena Buck

9:30
Public Relations for the Statistical Bioinformatics Group
Rainer Spang

9:30
COO-Classification of Diffuse Large B-Cell Lymphoma based on Proteomic Data
Nicole Seifert

9:30
Tissue Resolver - modelling complex tissues with single cells
Jakob Simeth

9:30
Progress Report
In silico analysis of integrated high-throughput pharmacological and multi-omics data for precision medicine
Durdam Das (PhD Student, Hoffman-Lab, ITEM)

9:30
Statistical Bioinformatics (Master)
Massively parallel digital transcriptional profiling of single cells
Andreas Lösch

09:30
Statistical Bioinformatics (Master)
DrImpute: imputing dropout events in single cell RNA sequencing data
Maria Attenberger

10:15
Statistical Bioinformatics (Master)
scImpute: An accurate and robust imputation method for single-cell RNA-seq data
Robert Bosek

09:30
Statistical Bioinformatics (Master)
bayNorm: Bayesian gene expression recovery, imputation and normalisation for single cell RNA-sequencing data
Marcel Mück

10:15
Statistical Bioinformatics (Master)
scRMD: Imputation for single cell RNA-seq data via robust matrix decomposition
Johannes Falk

09:30
Statistical Bioinformatics (Master)
scBatch: Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment
Julian Lorenz

10:15
Statistical Bioinformatics (Master)
SAVER: gene expression recovery for single-cell RNA sequencing
Felix Gottschlich

9:30
The matrixexponential and its derivative in the context of an MHN
Kevin Rupp

9:30
CellViabPred: a convolutional neural network to predict cell viability
Christoph Kopp

9:30
Public Relations for the Statistical Bioinformatics Group
Rainer Spang

9:30
AI Diagnosis of Lymphoma subtypes
Michael Huttner

Summer Break start

Summer Break end

9:30
Learning DTD reference from data
Zahra Nozari

9:30
Mutual Hazard Networks with Diagnosis Event and Survival Analysis
Rudolf Schill

9:30
Cell Type Deconvolution:
A world of thousand opportunities, and a solution named DAB
Marian Schön

9:30
Professional Specialisation (w.r.t. Master Thesis)
Combined CNV- and RNA-Seq-analyses of circulating tumor cells from blood of pancreatic carcinoma patients
Sibylle Wilfling

9:30
Cancelled for microarray course
cancelled

9:30
Causal Inference in Data Science and Machine Learning
Daniel Grünbaum

9:30
CRISPR-Cas9 Dropout Screens
Identification of high-salt associated
Lena Buck

9:30
INsTRuCT consortium
European scientists focusing on myeloid regulatory cell immunotherapy
Wouter‑Michiel Vierdag

9:30
Public Relations for the Statistical Bioinformatics Group
Rainer Spang

Cancelled

9:30
[P]CCA - Point/Cell Cloud (Classification) Analysis
Gunther Glehr

9:30
Master thesis presentation
Computational Analysis of Protein Expression in Diffuse Large B-Cell Lymphoma
Nicole Seifert

9:30
Landscape of R packages for eXplainable Artificial Intelligence
Claudio Lottaz

9:30
Integrating genomic data from cancer cell lines to build a neural network model for Drug Sensitivity Prediction
Durdam Das

9:30
2.5 years with Kubernetes at the Spang Lab - Review and Outlook
Christian Kohler

Start of Christmas Holidays

Institute of functional genomics-Statistical Bioinformatics

University of Regensburg

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